STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytfMOuter membrane protein, OMP85 family; COG: COG0729; Pfam: PF07244,PF01103; InterPro: IPR000184. (559 aa)    
Predicted Functional Partners:
EFE97543.1
Hypothetical protein; COG: COG2911; Pfam: PF04357; InterPro: IPR007452.
 
 
 0.992
EFE94755.1
Hypothetical protein.
  
 
 0.816
YtfP
AIG2-like family protein; COG: COG2105; Pfam: PF03674; InterPro: IPR005347.
 
   
 0.718
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.584
bspA
Transporter, small conductance mechanosensitive ion channel MscS family protein; COG: COG3264; Pfam: PF00924; InterPro: IPR006685.
 
    0.496
EFE96511.1
Putative signal transduction protein; COG: COG3103.
  
     0.456
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.432
YhcB
Hypothetical protein; COG: COG3105; Pfam: PF06295; InterPro: IPR009386.
  
     0.418
yjgP
Permease, YjgP/YjgQ family; COG: COG0795; Pfam: PF03739; InterPro: IPR005495.
  
    0.414
zipA
ZipA, C-terminal FtsZ-binding domain protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.412
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.