STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oapAOpacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340. (226 aa)    
Predicted Functional Partners:
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.773
atpI
ATP synthase F0, I subunit; COG: COG3312; Pfam: PF03899; InterPro: IPR005598.
  
     0.766
yecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
    0.766
EFE96463.1
Hypothetical protein.
  
     0.763
EFE94080.1
Hypothetical protein; COG: COG5633; Pfam: PF07233; InterPro: IPR010824.
  
     0.762
TomB
Hypothetical protein.
  
     0.760
YciC
Hypothetical protein; Pfam: PF06790; InterPro: IPR009627.
  
     0.760
uspB
Universal stress protein UspB.
  
     0.759
priC
Primosomal replication protein priB and priC; COG: COG3923; Pfam: PF07445; InterPro: IPR010890.
  
     0.757
EFE97704.1
Putative protein smp; COG: COG3726.
  
     0.757
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.