STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97569.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
pspG
Phage shock protein G; InterPro: IPR014318.
  
     0.757
yecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.706
uspB
Universal stress protein UspB.
  
     0.699
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
 
   
 0.686
tsgA
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
     0.677
EFE95529.1
YfcL protein; Pfam: PF08891; InterPro: IPR014987.
  
     0.675
lapA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.675
TomB
Hypothetical protein.
  
     0.645
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.635
oapA
Opacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.632
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.