STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97623.1Hypothetical protein; Pfam: PF03928; InterPro: IPR005624. (170 aa)    
Predicted Functional Partners:
PagN
Hypothetical protein; InterPro: IPR011250.
 
     0.758
FixJ
Response regulator receiver domain protein; COG: COG4566; Pfam: PF00072,PF00196; InterPro: IPR001789.
 
   
 0.718
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518; InterPro: IPR003594.
 
   
 0.650
EFE94373.1
FAD linked oxidase, C-terminal domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
  
  
 0.499
aceB
Malate synthase A; COG: COG2225; Pfam: PF01274; InterPro: IPR001465; Belongs to the malate synthase family.
  
  
 0.475
EFE96254.1
Cupin domain protein; Pfam: PF07883; InterPro: IPR013096.
  
    0.465
DbfB
Glyoxalase family protein; Pfam: PF00903; InterPro: IPR004360.
 
     0.458
EFE96406.1
Hypothetical protein; Pfam: PF01925.
  
     0.415
EFE94009.1
Hypothetical protein.
  
     0.414
EFE96134.1
Hypothetical protein.
 
     0.403
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.