STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PagNHypothetical protein; InterPro: IPR011250. (227 aa)    
Predicted Functional Partners:
EFE97623.1
Hypothetical protein; Pfam: PF03928; InterPro: IPR005624.
 
     0.758
FixL
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518; InterPro: IPR003594.
 
     0.647
FixJ
Response regulator receiver domain protein; COG: COG4566; Pfam: PF00072,PF00196; InterPro: IPR001789.
 
    0.564
NdhL
Tat pathway signal sequence domain protein; COG: COG1529; Pfam: PF02738; InterPro: IPR008274.
  
     0.518
cnu
OriC-binding nucleoid-associated protein; Pfam: PF05321; InterPro: IPR007985.
  
     0.494
KefA_3
Transporter, small conductance mechanosensitive ion channel MscS family protein; COG: COG3264; Pfam: PF00924; InterPro: IPR006685.
  
     0.484
EFE93579.1
Hypothetical protein; COG: COG3593.
  
    0.454
EFE96628.1
Hypothetical protein; Pfam: PF08980; InterPro: IPR015073.
  
     0.443
lepB
Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S26 family.
   
  
 0.424
EFE93451.1
Outer membrane porin, OprD family; Pfam: PF03573.
  
     0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.