STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97410.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
zntR
Zn(II)-responsive transcriptional regulator; COG: COG0789; Pfam: PF00376,PF09278; InterPro: IPR011788.
  
  
 0.925
ArfA_2
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
       0.602
TipA
Transcriptional regulator, MerR family; COG: COG0789; Pfam: PF00376,PF09278,PF05583; InterPro: IPR008396.
  
  
 0.577
rplQ
Ribosomal protein L17; COG: COG0203; Pfam: PF01196; InterPro: IPR000456; Belongs to the bacterial ribosomal protein bL17 family.
       0.482
IucD
Hypothetical protein; COG: COG3486; 1.14.13.59.
  
  
 0.420
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.