STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97377.1Hypothetical protein. (59 aa)    
Predicted Functional Partners:
EFE97376.1
Acetyltransferase, GNAT family; Pfam: PF00583.
       0.625
purR
Sugar-binding domain protein; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
       0.572
Gfo_1
Oxidoreductase, NAD-binding domain protein; COG: COG0673; Pfam: PF01408,PF02894; InterPro: IPR016040.
       0.518
iolE
AP endonuclease, family 2; COG: COG1082; Pfam: PF01261,PF07582; InterPro: IPR013022.
       0.518
idh
Oxidoreductase, NAD-binding domain protein; Pfam: PF01408; InterPro: IPR016040.
       0.518
proP4
Nucleoside transporter; Pfam: PF03825; InterPro: IPR004740.
       0.518
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.