STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase; COG: COG0036; Pfam: PF00834; InterPro: IPR013785; Belongs to the ribulose-phosphate 3-epimerase family. (225 aa)    
Predicted Functional Partners:
tktA
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474; overlaps another CDS with the same product name.
 
 0.985
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.978
TktB_2
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474.
 
 0.977
TktB_1
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474; overlaps another CDS with the same product name.
 
 0.970
Dxs_2
Transketolase, pyridine binding domain protein; COG: COG3958; Pfam: PF02779,PF02780; InterPro: IPR005475; overlaps another CDS with the same product name.
 
 0.962
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.956
gnd
Phosphogluconate dehydrogenase (decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.949
Dxs_4
Transketolase, pyridine binding domain protein; COG: COG3958; Pfam: PF02779,PF02780; InterPro: IPR005475.
 
 
 0.947
tktC
Transketolase, C-terminal domain protein; COG: COG3958; Pfam: PF02779,PF02780; InterPro: IPR015941; overlaps another CDS with the same product name.
 
 
 0.944
xylB
Xylulokinase; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR006000.
 
 
 0.929
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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