STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97335.1Fimbrial assembly protein PilN; Pfam: PF05137. (178 aa)    
Predicted Functional Partners:
EFE97336.1
Hypothetical protein.
  
 
 0.991
pilQ
Type IV pilus secretin PilQ; COG: COG4796; Pfam: PF07660,PF03958,PF00263; InterPro: IPR013355.
  
 
 0.980
EFE97333.1
Hypothetical protein.
       0.779
EFE97334.1
Hypothetical protein.
       0.778
pilB
Type II/IV secretion system protein; COG: COG2804; Pfam: PF00437; InterPro: IPR001482.
  
 
 0.701
ispE
Twitching motility protein; COG: COG2805; Pfam: PF00437; InterPro: IPR006321.
  
 
 0.698
hofC
Bacterial type II secretion system domain protein F; COG: COG1459; Pfam: PF00482; InterPro: IPR001992.
   
 
 0.691
EFE97331.1
Hypothetical protein.
       0.625
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
      
 0.412
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.410
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.