STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
igaAIntracellular growth attenuator protein IgaA; Pfam: PF07095; InterPro: IPR010771. (710 aa)    
Predicted Functional Partners:
EFE96391.1
TIGR02099 family protein; COG: COG3164; InterPro: IPR011836.
  
     0.770
bssS
Biofilm formation regulatory protein BssS.
  
     0.761
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.756
EFE96215.1
Hypothetical protein.
  
     0.753
EFE96176.1
Hypothetical protein.
  
     0.751
EFE94427.1
Hypothetical protein.
  
     0.743
baeS2
Putative signal transduction histidine-protein kinase BaeS; COG: COG0642.
  
     0.739
YnfB
Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.
  
     0.739
EFE97000.1
Hypothetical protein; COG: COG5645; Pfam: PF07119; InterPro: IPR010780.
  
     0.730
pagP
Antimicrobial peptide resistance and lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.729
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.