STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gntR-2HTH-type transcriptional regulator GntR; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761. (331 aa)    
Predicted Functional Partners:
GalR_4
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356; InterPro: IPR000843.
  
     0.764
purR2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532.
  
     0.749
CytR_3
Hypothetical protein; COG: COG1609.
  
     0.739
DegA_2
Hypothetical protein; COG: COG1609.
  
     0.676
cscR
Sugar-binding domain protein; COG: COG1609; Pfam: PF00532; InterPro: IPR001761; overlaps another CDS with the same product name.
  
     0.625
aroK3
Carbohydrate kinase, thermoresistant glucokinase family; COG: COG3265; InterPro: IPR006001.
 
 
 0.621
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
 
 0.619
yhhW
Pirin family protein; COG: COG1741; Pfam: PF02678; InterPro: IPR012093; Belongs to the pirin family.
       0.487
gntU
Low-affinity gluconate transporter; COG: COG2610; Pfam: PF02447; InterPro: IPR003474.
  
    0.453
ptsP
Phosphoenolpyruvate-protein phosphotransferase; COG: COG1080; Pfam: PF00381,PF05524,PF00391,PF02896,PF00359; InterPro: IPR006318.
   
 
 0.438
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.