STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp1Type VI secretion system effector, Hcp1 family; COG: COG3157; Pfam: PF05638; InterPro: IPR008514. (160 aa)    
Predicted Functional Partners:
EFE95114.1
Type VI secretion protein, VC_A0107 family; COG: COG3516; Pfam: PF05591; InterPro: IPR008312.
 
 
 0.974
sirA
Type VI secretion protein, EvpB/VC_A0108 family; COG: COG3517; Pfam: PF05943; InterPro: IPR010269.
 
 
 0.953
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
 
  
 0.938
EFE95115.1
Type VI secretion-associated protein, ImpA family; COG: COG3515; Pfam: PF06812; InterPro: IPR010657.
 
  
 0.925
EFE95102.1
Type VI secretion protein, VC_A0111 family; COG: COG3520; Pfam: PF06996; InterPro: IPR010732.
 
  
 0.910
Hcp1_2
Type VI secretion system effector, Hcp1 family; COG: COG3157; Pfam: PF05638; InterPro: IPR008514.
  
  
 
0.901
vrgS
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524,PF06715; InterPro: IPR006533.
 
  
 0.897
EFE96492.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524,PF06715; InterPro: IPR006533.
 
  
 0.897
EFE95099.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524; InterPro: IPR006533.
 
  
 0.897
vasA
Type VI secretion protein, VC_A0110 family; COG: COG3519; Pfam: PF05947; InterPro: IPR010272.
 
  
 0.867
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.