STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carRPutative flagellar protein FliS; COG: COG2771; Pfam: PF03472,PF00196; InterPro: IPR005143. (245 aa)    
Predicted Functional Partners:
expI
Autoinducer synthetase; Pfam: PF00765; InterPro: IPR016181.
  
  
 0.976
lasI
Acyl-homoserine-lactone synthase; COG: COG3916; Pfam: PF00765; InterPro: IPR016181.
 
   
 0.890
EFE96725.1
Transcriptional regulatory protein, C-terminal domain protein; COG: COG3710; Pfam: PF00486; InterPro: IPR001867.
  
     0.534
kdgK
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
     0.533
barA
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
   
 0.508
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
   
 0.483
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
   
 0.470
pilF
Type IV pilus biogenesis/stability protein PilW; COG: COG3063; Pfam: PF07719,PF00515; InterPro: IPR013360.
 
     0.463
EFE97922.1
Hypothetical protein.
  
     0.444
EFE96972.1
YhhN-like protein; COG: COG3714; Pfam: PF07947; InterPro: IPR012506.
  
     0.422
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.