STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CytR_3Hypothetical protein; COG: COG1609. (76 aa)    
Predicted Functional Partners:
cytR
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
     0.969
PurR_1
Sugar-binding domain protein; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.771
AscG_2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843.
  
     0.769
galR
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.769
AscG_4
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.769
galR-2
HTH-type transcriptional regulator GalR; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.769
malI-2
Maltose regulon regulatory protein MalI; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.769
galS
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843.
  
     0.769
lacI-2
Lac repressor; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843.
  
     0.767
malI
Sugar-binding domain protein; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.766
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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