STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrDTransporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701. (394 aa)    
Predicted Functional Partners:
Bmr3_2
Drug resistance MFS transporter, drug:H+ antiporter-2 family; COG: COG0477; Pfam: PF07690; InterPro: IPR004638.
  
   
 0.681
HsrA_2
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701; Belongs to the major facilitator superfamily.
  
   
 0.577
Stp_2
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
   
 0.547
uspB
Universal stress protein UspB.
  
     0.505
smvA
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
   
 0.465
fpr
Oxidoreductase NAD-binding domain protein; COG: COG1018; Pfam: PF00970,PF00175; InterPro: IPR001433.
       0.436
farB
Drug resistance MFS transporter, drug:H+ antiporter-2 family; COG: COG0477; Pfam: PF07690; InterPro: IPR004638; Belongs to the major facilitator superfamily.
  
   
 0.409
EFE97085.1
Hypothetical protein; COG: COG2345; Pfam: PF03551.
       0.408
YtfJ
Conserved hypothetical protein YtfJ-family, TIGR01626; COG: COG3054; InterPro: IPR006513.
  
     0.406
panZ
Hypothetical protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.403
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.