STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97087.1Hypothetical protein; COG: COG3152; Pfam: PF05656; InterPro: IPR008523. (150 aa)    
Predicted Functional Partners:
flgM
Flagellar biosynthesis anti-sigma factor FlgM; COG: COG2747; Pfam: PF04316; InterPro: IPR007412.
  
     0.710
YobD
Hypothetical protein; COG: COG4811; Pfam: PF06173; InterPro: IPR009328.
  
     0.684
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.659
EFE95445.1
Hypothetical protein.
  
     0.654
QseG
Hypothetical protein.
  
   
 0.649
sgrR
ABC transporter, substrate-binding protein, family 5; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
  
     0.626
bcsE
Cellulose biosynthesis protein BcsE.
  
     0.622
EFE94277.1
Hypothetical protein.
  
     0.619
wzzE
Chain length determinant protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.611
EFE94427.1
Hypothetical protein.
  
     0.605
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.