STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE97113.1Phage holin, lambda family. (109 aa)    
Predicted Functional Partners:
EFE97115.1
Phage head completion protein (GPL); Pfam: PF05926; InterPro: IPR009225.
  
    0.822
EFE97114.1
Phage Tail Protein X; Pfam: PF05489; InterPro: IPR008861.
  
    0.804
EFE97111.1
Hypothetical protein.
  
    0.787
CwlK
Serine-type D-Ala-D-Ala carboxypeptidase; Pfam: PF02557.
       0.779
EFE97110.1
Hypothetical protein.
       0.773
EFE97109.1
P2 phage tail completion protein R (GpR); Pfam: PF06891; InterPro: IPR009678.
  
    0.694
EFE97108.1
Phage virion morphogenesis protein; Pfam: PF05069; InterPro: IPR006522.
  
    0.683
EFE97116.1
Phage small terminase subunit; Pfam: PF05944; InterPro: IPR010270.
  
    0.629
EFE97117.1
Phage major capsid protein, P2 family; Pfam: PF05125; InterPro: IPR006441.
  
    0.528
EFE97118.1
Phage capsid scaffolding protein GpO; Pfam: PF05929; InterPro: IPR009228.
  
    0.488
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.