STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yibQDivergent polysaccharide deacetylase; COG: COG2861; Pfam: PF04748; InterPro: IPR006837. (316 aa)    
Predicted Functional Partners:
envC
Peptidase, M23 family; COG: COG4942; Pfam: PF01551; InterPro: IPR002886.
 
   
 0.862
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.784
Eae
Hypothetical protein.
  
     0.490
pspE
Rhodanese-like protein; COG: COG0607; Pfam: PF00581; InterPro: IPR001763.
       0.467
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.438
grxC
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.434
EFE96124.1
yecA family protein; COG: COG3079; Pfam: PF03695; InterPro: IPR005356; Belongs to the UPF0149 family.
  
     0.431
nlpD
Peptidase, M23 family; COG: COG0739; Pfam: PF01476,PF01551; InterPro: IPR002886.
  
   
 0.422
EFE95974.1
Hypothetical protein.
  
     0.415
ygeR
Peptidase, M23 family; COG: COG0739; Pfam: PF01476,PF01551; InterPro: IPR002886.
  
   
 0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.