STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaLO-antigen ligase; Pfam: PF04932. (413 aa)    
Predicted Functional Partners:
rfaF
Lipopolysaccharide heptosyltransferase II; COG: COG0859; Pfam: PF01075; InterPro: IPR011910.
  
 
 0.975
rfaC
Lipopolysaccharide heptosyltransferase I; COG: COG0859; Pfam: PF01075; InterPro: IPR011908.
  
 
 0.973
rfaG
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
 
 
 0.936
RfaQ_1
Putative lipopolysaccharide heptosyltransferase III; COG: COG0859; Pfam: PF01075; InterPro: IPR011916.
  
 
 0.920
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.918
RfaQ_2
Heptosyltransferase; Pfam: PF01075; InterPro: IPR002201.
  
 
 0.912
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.902
HyaD_1
Glycosyltransferase, group 2 family protein; COG: COG0463; Pfam: PF00535; InterPro: IPR001173.
  
  
 0.798
TagE_1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
 
  
 0.768
rfaD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
     
 0.664
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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