STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaBGlycosyltransferase, group 1 family protein; COG: COG0438; Pfam: PF00534; InterPro: IPR001296. (365 aa)    
Predicted Functional Partners:
rfaG
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
 
  
0.938
EFE97161.1
Hypothetical protein.
 
     0.806
RfaQ_1
Putative lipopolysaccharide heptosyltransferase III; COG: COG0859; Pfam: PF01075; InterPro: IPR011916.
 
  
 0.737
EFE94629.1
Hypothetical protein; Pfam: PF01075.
 
  
 0.702
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.579
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.555
TagE_1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
  
     0.505
rfaL
O-antigen ligase; Pfam: PF04932.
 
  
 0.472
RffG_2
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
 
  
 0.463
EFE95217.1
Polysaccharide biosynthesis protein; Pfam: PF01943; InterPro: IPR002797.
 
  
 0.425
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.