STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RavAATPase family associated with various cellular activities (AAA); COG: COG0714; Pfam: PF07728; InterPro: IPR011704. (523 aa)    
Predicted Functional Partners:
viaA
Putative protein ViaA; COG: COG2425.
 
  
 0.963
EFE97548.1
Hypothetical protein; Pfam: PF06526; InterPro: IPR009491.
  
     0.668
YijD
Hypothetical protein; Pfam: PF07226; InterPro: IPR009867.
  
     0.641
EFE97991.1
Hypothetical protein; COG: COG1073; Pfam: PF06500; InterPro: IPR010520; 3.1.-.-; Belongs to the UPF0255 family.
  
     0.573
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.570
yafD
Endonuclease/exonuclease/phosphatase family protein; COG: COG3021; Pfam: PF03372; InterPro: IPR005135.
  
     0.509
kup
Potassium uptake protein; Responsible for the low-affinity transport of potassium into the cell, with the probable concomitant uptake of protons (symport system); Belongs to the HAK/KUP transporter (TC 2.A.72) family.
       0.483
lpp
Lipoprotein LPP repeat protein; COG: COG4238; Pfam: PF04728.
  
     0.467
YfeY_2
Hypothetical protein; Pfam: PF06572; InterPro: IPR010938.
  
     0.443
EFE94154.1
Hypothetical protein; COG: COG1721; Pfam: PF01882.
  
  
 0.441
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.