STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DegA_1Sugar-binding domain protein; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843. (330 aa)    
Predicted Functional Partners:
purR2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532.
  
     0.766
CytR_3
Hypothetical protein; COG: COG1609.
  
     0.765
EFE94454.1
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843; overlaps another CDS with the same product name.
  
     0.764
cscR
Sugar-binding domain protein; COG: COG1609; Pfam: PF00532; InterPro: IPR001761; overlaps another CDS with the same product name.
  
     0.749
GlpT_1
Transporter, major facilitator family protein; COG: COG2271; Pfam: PF07690; InterPro: IPR011701.
      0.681
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.631
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
    
 
 0.619
phyM
Histidine acid phosphatase; Pfam: PF00328; InterPro: IPR000560.
      0.536
SuhB_1
Inositol monophosphatase family protein; COG: COG0483; Pfam: PF00459; InterPro: IPR000760.
       0.492
ptsP
Phosphoenolpyruvate-protein phosphotransferase; COG: COG1080; Pfam: PF00381,PF05524,PF00391,PF02896,PF00359; InterPro: IPR006318.
   
 
 0.438
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.