STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoRFCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711. (231 aa)    
Predicted Functional Partners:
dgoK
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
  
 0.927
dgoD
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
     0.925
eda
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF02581; InterPro: IPR013785.
 
   
 0.821
uxuR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
     0.726
EFE96999.1
Hypothetical protein; Pfam: PF07676; InterPro: IPR011042.
      0.725
exuR
Transcriptional regulator, GntR family; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
     0.703
dgoK-2
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
  
 0.678
YdfH_2
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.589
RhmT_2
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
     0.567
dgoT
D-galactonate transporter; COG: COG0477; Pfam: PF07690; InterPro: IPR004744.
 
     0.554
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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