STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96999.1Hypothetical protein; Pfam: PF07676; InterPro: IPR011042. (443 aa)    
Predicted Functional Partners:
ompA4
Tat pathway signal sequence domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 
 0.785
EFE97000.1
Hypothetical protein; COG: COG5645; Pfam: PF07119; InterPro: IPR010780.
  
   
 0.766
EFE96215.1
Hypothetical protein.
  
     0.766
dgoT
D-galactonate transporter; COG: COG0477; Pfam: PF07690; InterPro: IPR004744.
       0.762
EFE94755.1
Hypothetical protein.
 
     0.749
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.748
dgoR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
      0.725
dgoD
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
      0.719
EFE96807.1
Hypothetical protein.
  
     0.716
EFE94427.1
Hypothetical protein.
  
     0.710
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.