STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96796.1AP endonuclease, family 2; Pfam: PF01261. (250 aa)    
Predicted Functional Partners:
kdgK2
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
  
 0.974
RhmT_3
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
 
    0.751
DegA_2
Hypothetical protein; COG: COG1609.
 
    0.720
EFE95872.1
Hypothetical protein.
  
     0.637
iolD
Thiamine pyrophosphate enzyme, central domain protein; COG: COG3962; Pfam: PF02776,PF00205,PF02775; InterPro: IPR011766; Belongs to the TPP enzyme family.
  
  
 0.611
iolB
Myo-inositol catabolism protein IolB; COG: COG3718; Pfam: PF06845; InterPro: IPR010669.
  
  
 0.587
pdxB
4-phosphoerythronate dehydrogenase; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily.
 
    0.551
iolC
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
  
  
 0.509
LamB_2
Hypothetical protein; Pfam: PF02264; InterPro: IPR003192.
  
     0.465
FimA_8
Fimbrial protein; Pfam: PF00419; InterPro: IPR000259.
  
     0.409
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.