STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GarP_1Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. (441 aa)    
Predicted Functional Partners:
hpaX
4-hydroxyphenylacetate permease; COG: COG0477; Pfam: PF07690; InterPro: IPR012707.
  
    0.714
GlpT_1
Transporter, major facilitator family protein; COG: COG2271; Pfam: PF07690; InterPro: IPR011701.
  
     0.656
uhpC
Transporter, major facilitator family protein; COG: COG2271; Pfam: PF07690; InterPro: IPR011701.
  
     0.614
NaiP
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
     0.476
glyQ
glycine--tRNA ligase, alpha subunit; COG: COG0752; Pfam: PF02091; InterPro: IPR002310.
       0.462
glyS
glycine--tRNA ligase, beta subunit; COG: COG0751; Pfam: PF02092,PF05746; InterPro: IPR015944.
       0.456
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.