STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DcrB_1Hypothetical protein. (216 aa)    
Predicted Functional Partners:
WapA_1
RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05488,PF05593,PF03527; InterPro: IPR001826.
  
 
 0.898
WapA_3
RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05488,PF05593,PF03527; InterPro: IPR001826.
  
 
 0.898
gst
Glutathione S-transferase, C-terminal domain protein; COG: COG0625; Pfam: PF02798,PF00043; InterPro: IPR012335.
       0.655
hisE
phosphoribosyl-ATP diphosphatase; COG: COG0139; Pfam: PF01502,PF01503; InterPro: IPR008179; In the N-terminal section; belongs to the PRA-CH family.
   
    0.548
HcaD
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027.
   
    0.518
fdxH
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
       0.494
fdnI
Formate dehydrogenase, gamma subunit; COG: COG2864; Pfam: PF01292; InterPro: IPR006471.
       0.494
fdhE
Formate dehydrogenase accessory protein FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
       0.494
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.
       0.491
selB
Selenocysteine-specific translation elongation factor; COG: COG3276; Pfam: PF00009,PF03144,PF09106,PF09107; InterPro: IPR004535.
       0.491
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.