STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96829.1Hypothetical protein. (483 aa)    
Predicted Functional Partners:
EFE96830.1
Pentapeptide repeat protein; COG: COG1357; Pfam: PF00805; InterPro: IPR001646.
     0.991
PipB2_2
Pentapeptide repeat protein; COG: COG1357; Pfam: PF00805.
     0.926
EFE96832.1
Hypothetical protein.
 
     0.925
EFE96833.1
Hypothetical protein.
 
     0.922
vrgS
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524,PF06715; InterPro: IPR006533.
 
    0.847
EFE95116.1
Type VI secretion-associated protein, BMA_A0400 family.
  
     0.712
EFE95097.1
Hypothetical protein; Pfam: PF05488.
 
     0.691
EFE96492.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524,PF06715; InterPro: IPR006533.
 
    0.683
EFE95099.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524; InterPro: IPR006533.
 
    0.679
EFE95120.1
Type VI secretion lipoprotein, VC_A0113 family; COG: COG3521.
 
    0.677
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.