STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96860.1Tat pathway signal sequence domain protein; Pfam: PF04932; InterPro: IPR007016. (551 aa)    
Predicted Functional Partners:
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.902
mrfG
Fimbrial protein; Pfam: PF00419; InterPro: IPR000259.
 
     0.858
papC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
 
    0.692
EFE96862.1
Hypothetical protein; COG: COG0545; Pfam: PF00254; 5.2.1.8.
     
 0.688
EFE96861.1
Hypothetical protein.
       0.682
mrfD
Gram-negative pili assembly chaperone domain protein; COG: COG3121; Pfam: PF00345,PF02753; InterPro: IPR016147.
 
     0.623
tex
ASCH domain protein; COG: COG3097; Pfam: PF06164; InterPro: IPR008314; Belongs to the UPF0267 family.
  
     0.614
gerE
Transcriptional regulator, LuxR family; Pfam: PF00196; InterPro: IPR011991.
  
    0.583
mrfX
Fimbrial protein; Pfam: PF00419; InterPro: IPR014779.
       0.577
hslJ
META domain protein; COG: COG3187; Pfam: PF03724; InterPro: IPR005184.
 
     0.559
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.