STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dxs_2Transketolase, pyridine binding domain protein; COG: COG3958; Pfam: PF02779,PF02780; InterPro: IPR005475; overlaps another CDS with the same product name. (332 aa)    
Predicted Functional Partners:
TktB_1
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474; overlaps another CDS with the same product name.
  
  0.999
tktA
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474; overlaps another CDS with the same product name.
  
  0.997
TktB_2
Transketolase, thiamine diphosphate binding domain protein; COG: COG3959; Pfam: PF00456; InterPro: IPR005474.
  
  0.997
rpe
Ribulose-phosphate 3-epimerase; COG: COG0036; Pfam: PF00834; InterPro: IPR013785; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.962
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.961
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.961
pgi
Glucose-6-phosphate isomerase; COG: COG0166; Pfam: PF00342; InterPro: IPR001672; Belongs to the GPI family.
  
 0.960
fbp
Fructose-1,6-bisphosphatase; COG: COG0158; Pfam: PF00316; InterPro: IPR000146; Belongs to the FBPase class 1 family.
  
 
 0.941
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 
 0.938
Dxs_4
Transketolase, pyridine binding domain protein; COG: COG3958; Pfam: PF02779,PF02780; InterPro: IPR005475.
 
 
0.935
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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