STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96877.1Carboxymethylenebutenolidase; COG: COG1073; Pfam: PF01738. (342 aa)    
Predicted Functional Partners:
nepI
Transporter, major facilitator family protein; COG: COG2814; Pfam: PF07690; InterPro: IPR011701.
 
   
 0.897
EFE97048.1
Hypothetical protein.
     
 0.721
EFE95751.1
Phospholipase/carboxylesterase; COG: COG0400; Pfam: PF02230; InterPro: IPR003140.
     
 0.721
DmlR_8
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
 
    0.632
EFE98295.1
Cupin domain protein; COG: COG1917; Pfam: PF07883.
 
    0.624
pfkB
1-phosphofructokinase; COG: COG1105; Pfam: PF00294; InterPro: IPR011611; Belongs to the carbohydrate kinase PfkB family.
   
    0.546
EFE96878.1
Phosphoglycerate mutase family protein; COG: COG0406; Pfam: PF00300; InterPro: IPR013078.
       0.443
TagE_1
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
   
 
 0.412
EFE97161.1
Hypothetical protein.
   
 
 0.412
rfaG
Glycosyltransferase, group 1 family protein; Pfam: PF00534; InterPro: IPR001296.
   
 
 0.412
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.