STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HigADNA-binding helix-turn-helix protein; Pfam: PF01381; InterPro: IPR001387. (99 aa)    
Predicted Functional Partners:
EFE96895.1
Toxin-antitoxin system, toxin component, RelE family; COG: COG4683.
 
     0.951
yhjU
Cellulose synthase operon protein YhjU.
 
     0.505
bcsE
Cellulose biosynthesis protein BcsE.
 
     0.476
EFE95109.1
FHA domain protein; Pfam: PF00498.
  
     0.441
yhjQ
Cellulose synthase operon protein YhjQ; COG: COG1192; Pfam: PF06564; InterPro: IPR009504.
 
    0.429
EFE95108.1
Type VI secretion system FHA domain protein.
  
     0.415
bcsF
Celllulose biosynthesis operon protein BcsF/YhjT.
       0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.