STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96899.1Hypothetical protein. (63 aa)    
Predicted Functional Partners:
yhjQ
Cellulose synthase operon protein YhjQ; COG: COG1192; Pfam: PF06564; InterPro: IPR009504.
   
 
 0.927
bcsE
Cellulose biosynthesis protein BcsE.
   
 
 0.839
celA-2
Cellulose synthase catalytic subunit (UDP-forming); Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
     
 0.826
BcsB
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
     
 0.687
bcsZ
Glycosyl hydrolase family 8; COG: COG3405; Pfam: PF01270; InterPro: IPR012341; Belongs to the glycosyl hydrolase 8 (cellulase D) family.
     
 0.635
bcsF
Celllulose biosynthesis operon protein BcsF/YhjT.
     
 0.601
yhjU
Cellulose synthase operon protein YhjU.
     
 0.568
bcsC
Tetratricopeptide repeat protein; COG: COG0457; Pfam: PF07719,PF00515,PF05420; InterPro: IPR011990.
     
 0.562
EFE93864.1
Hypothetical protein; COG: COG1192.
   
 
 0.435
parA
Plasmid partition protein A; COG: COG1192.
   
 
 0.435
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.