STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aprASerralysin; COG: COG2931; Pfam: PF00413,PF08548,PF00353; InterPro: IPR013858. (489 aa)    
Predicted Functional Partners:
Inh
Protease inhibitor Inh; Pfam: PF02974; InterPro: IPR003086.
  
 
 0.933
prtC
Type I secretion membrane fusion protein, HlyD family; COG: COG0845; Pfam: PF00529; InterPro: IPR010129.
 
  
 0.793
tliD
Type I secretion system ATPase; COG: COG4618; Pfam: PF00005; InterPro: IPR010128.
 
 
 0.791
EFE93959.1
Phage major capsid protein, HK97 family; InterPro: IPR006444.
 
 
   0.711
EFE93495.1
Hypothetical protein; Pfam: PF04865.
 
     0.692
EFE93957.1
Putative phage DNA packaging protein.
 
 
 
 0.678
tliF
Type I secretion outer membrane protein, TolC family; COG: COG1538; Pfam: PF02321; InterPro: IPR010130.
 
  
 0.664
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
 
  
 0.644
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
  
  
 0.628
EFE95732.1
Hypothetical protein.
  
   
 0.617
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.