STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YqjC_1Hypothetical protein; Pfam: PF06476; InterPro: IPR009468. (130 aa)    
Predicted Functional Partners:
ElaB_1
Hypothetical protein; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
  
    0.749
YgdR_3
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
  
    0.591
pgpB
PAP2 family protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
  
     0.550
EFE96974.1
Hypothetical protein.
       0.531
EFE98138.1
Hypothetical protein; COG: COG3126.
  
    0.518
osmY
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR014004.
   
    0.513
YgdR_2
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
  
    0.513
ygaU
LysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR007055.
   
    0.495
wrbA
NAD(P)H:quinone oxidoreductase, type IV; COG: COG0655; Pfam: PF00258; InterPro: IPR010089.
   
    0.495
psiF
PsiF repeat protein; Pfam: PF07769; InterPro: IPR011690.
  
    0.494
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.