STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
braGABC transporter, ATP-binding protein; COG: COG0410; Pfam: PF00005; InterPro: IPR003439; Belongs to the ABC transporter superfamily. (233 aa)    
Predicted Functional Partners:
braE
Branched-chain amino acid ABC transporter, permease protein; COG: COG4177; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
Branched-chain amino acid transporter permease subunit LivH; COG: COG0559; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
braF
ABC transporter, ATP-binding protein; COG: COG0411; Pfam: PF00005; InterPro: IPR003439.
 
 
0.993
braC
Receptor family ligand-binding protein; COG: COG0683; Pfam: PF01094; InterPro: IPR001828.
 
 
 0.991
bioC
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
      0.800
urtC
Urea ABC transporter, permease protein UrtC; COG: COG4177; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
  
 0.764
urtB
Urea ABC transporter, permease protein UrtB; COG: COG0559; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.702
LysN_2
Aminotransferase, class I/II; COG: COG1167; Pfam: PF00155; InterPro: IPR004839.
       0.450
urtA
Urea ABC transporter, urea binding protein; COG: COG0683.
  
  
 0.444
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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