STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059. (437 aa)    
Predicted Functional Partners:
ugpE
ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.999
ugpA
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
 
 0.997
upgC
ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.995
malC
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.870
malF
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
 
 
 0.864
malK2
ABC transporter, ATP-binding protein; COG: COG3839; Pfam: PF00005,PF03459; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
 
 
 0.863
malK
Maltose/maltodextrin import ATP-binding protein MalK; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family.
 
 
 0.854
ugpQ2
Glycerophosphodiester phosphodiesterase family protein; COG: COG0584; Pfam: PF03009; InterPro: IPR004129.
 
  
 0.737
EFE96749.1
Hypothetical protein.
       0.567
malD
ABC transporter, permease protein; COG: COG3833; Pfam: PF00528; InterPro: IPR000515.
 
   
 0.539
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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