STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpQ2Glycerophosphodiester phosphodiesterase family protein; COG: COG0584; Pfam: PF03009; InterPro: IPR004129. (246 aa)    
Predicted Functional Partners:
glpQ
Glycerophosphodiester phosphodiesterase family protein; COG: COG0584; Pfam: PF03009; InterPro: IPR004129.
     
 0.917
pldB
Hydrolase, alpha/beta domain protein; COG: COG2267; Pfam: PF00561; InterPro: IPR000073.
    
 0.906
ugpE
ABC transporter, permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
  
 0.877
ugpA
ABC transporter, permease protein; COG: COG1175; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.858
upgC
ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
  
 0.832
ugpB
ABC transporter, solute-binding protein; COG: COG1653; Pfam: PF01547; InterPro: IPR006059.
 
  
 0.737
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
  
 0.564
glpK2
Putative glycerol kinase; COG: COG0554; Pfam: PF00370,PF02782; InterPro: IPR000577; Belongs to the FGGY kinase family.
 
  
 0.537
glpC
Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; COG: COG0247; Pfam: PF02754; InterPro: IPR012285.
  
 
  0.529
aqpZ
Aquaporin Z; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.428
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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