STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijOTranscriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005. (285 aa)    
Predicted Functional Partners:
msmR
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.675
soxS
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
     0.662
Rob_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
     0.629
araC3
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
     0.563
asoB
Amino acid permease; Pfam: PF00324; InterPro: IPR002293.
  
     0.559
FeuC
Iron chelate uptake ABC transporter, FeCT family, permease protein; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.540
BtuF_2
Periplasmic binding protein; COG: COG0614; Pfam: PF01497; InterPro: IPR002491.
  
    0.539
HmuV_1
ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593.
  
    0.538
rob
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
     0.529
gutM
Glucitol operon activator protein GutM; COG: COG4578; Pfam: PF06923; InterPro: IPR009693.
  
     0.481
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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