Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFE96528.1 | YohC | HMPREF0758_1957 | HMPREF0758_4761 | Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. | Hypothetical protein; Pfam: PF06930; InterPro: IPR009698. | 0.554 |
| EFE96528.1 | algQ | HMPREF0758_1957 | HMPREF0758_1671 | Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.666 |
| EFE96528.1 | sirB2 | HMPREF0758_1957 | HMPREF0758_3394 | Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. | Invasion gene expression up-regulator, SirB; COG: COG3094; Pfam: PF04247; InterPro: IPR007360. | 0.456 |
| EFE96836.1 | algQ | HMPREF0758_1430 | HMPREF0758_1671 | Hypothetical protein; COG: COG3274; overlaps another CDS with the same product name. | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.463 |
| EFE97848.1 | RpoS | HMPREF0758_0432 | HMPREF0758_0433 | Sigma-70, region 4; COG: COG0568; Pfam: PF04539,PF04545; InterPro: IPR011991. | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.991 |
| EFE97848.1 | algQ | HMPREF0758_0432 | HMPREF0758_1671 | Sigma-70, region 4; COG: COG0568; Pfam: PF04539,PF04545; InterPro: IPR011991. | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.749 |
| RpoS | EFE97848.1 | HMPREF0758_0433 | HMPREF0758_0432 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sigma-70, region 4; COG: COG0568; Pfam: PF04539,PF04545; InterPro: IPR011991. | 0.991 |
| RpoS | algQ | HMPREF0758_0433 | HMPREF0758_1671 | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.731 |
| YohC | EFE96528.1 | HMPREF0758_4761 | HMPREF0758_1957 | Hypothetical protein; Pfam: PF06930; InterPro: IPR009698. | Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. | 0.554 |
| YohC | algQ | HMPREF0758_4761 | HMPREF0758_1671 | Hypothetical protein; Pfam: PF06930; InterPro: IPR009698. | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | 0.753 |
| algQ | EFE96528.1 | HMPREF0758_1671 | HMPREF0758_1957 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. | 0.666 |
| algQ | EFE96836.1 | HMPREF0758_1671 | HMPREF0758_1430 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Hypothetical protein; COG: COG3274; overlaps another CDS with the same product name. | 0.463 |
| algQ | EFE97848.1 | HMPREF0758_1671 | HMPREF0758_0432 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Sigma-70, region 4; COG: COG0568; Pfam: PF04539,PF04545; InterPro: IPR011991. | 0.749 |
| algQ | RpoS | HMPREF0758_1671 | HMPREF0758_0433 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.731 |
| algQ | YohC | HMPREF0758_1671 | HMPREF0758_4761 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Hypothetical protein; Pfam: PF06930; InterPro: IPR009698. | 0.753 |
| algQ | nudC | HMPREF0758_1671 | HMPREF0758_1672 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | NAD(+) diphosphatase; COG: COG2816; Pfam: PF09296,PF09297,PF00293; InterPro: IPR000086; Belongs to the Nudix hydrolase family. NudC subfamily. | 0.586 |
| algQ | ptsH | HMPREF0758_1671 | HMPREF0758_2658 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Phosphocarrier protein HPr; COG: COG1925; Pfam: PF00381; InterPro: IPR000032. | 0.675 |
| algQ | rpoD | HMPREF0758_1671 | HMPREF0758_1929 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.904 |
| algQ | rpoH | HMPREF0758_1671 | HMPREF0758_1596 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.656 |
| algQ | sirB2 | HMPREF0758_1671 | HMPREF0758_3394 | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase. | Invasion gene expression up-regulator, SirB; COG: COG3094; Pfam: PF04247; InterPro: IPR007360. | 0.493 |
page 1 of 2