STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iclRTranscriptional regulator, IclR family, C-terminal domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR014757. (276 aa)    
Predicted Functional Partners:
uca
Urea carboxylase; COG: COG0439; Pfam: PF00289,PF02786,PF02785,PF02626,PF02682,PF00364; InterPro: IPR014084.
  
    0.942
ybgJ
TIGR00370 family protein; COG: COG2049; Pfam: PF02682; InterPro: IPR010016.
  
    0.535
dur
Biotin-dependent carboxylase domain protein; COG: COG1984; Pfam: PF02626; InterPro: IPR003778.
  
    0.522
LutR_6
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.464
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
       0.450
YdfH_1
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
    0.424
aroK-3
Shikimate kinase; COG: COG3265; Pfam: PF01202; InterPro: IPR006001.
       0.422
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.