STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbJCsbD-like protein; COG: COG3237; Pfam: PF05532; InterPro: IPR008462; Belongs to the UPF0337 (CsbD) family. (69 aa)    
Predicted Functional Partners:
EFE97721.1
Hypothetical protein; Pfam: PF07043; InterPro: IPR009760.
 
  
 0.904
osmY
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR014004.
 
  
 0.890
OsmY_4
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR014004.
 
  
 0.793
YgdR_1
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
   
    0.775
OsmY_3
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR007055.
 
  
 0.630
elaB-2
Protein ElaB; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
  
  
 0.566
YgdR_2
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
   
    0.539
YgdR_3
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
   
    0.539
EFE95980.1
Acetyltransferase, GNAT family; COG: COG2388; Pfam: PF00583; InterPro: IPR016181.
  
    0.524
wza
Polysaccharide biosynthesis/export protein; COG: COG1596; Pfam: PF02563; InterPro: IPR003715.
   
    0.518
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.