Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Maa_2 | lacA | HMPREF0758_4762 | HMPREF0758_1713 | Bacterial transferase hexapeptide repeat protein; Pfam: PF00132. | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | 0.420 |
lacA | Maa_2 | HMPREF0758_1713 | HMPREF0758_4762 | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | Bacterial transferase hexapeptide repeat protein; Pfam: PF00132. | 0.420 |
lacA | wbaP | HMPREF0758_1713 | HMPREF0758_3603 | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362. | 0.763 |
lacA | zur | HMPREF0758_1713 | HMPREF0758_1712 | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | Transcriptional regulator, Fur family; COG: COG0735; Pfam: PF01475; InterPro: IPR002481; Belongs to the Fur family. | 0.452 |
wbaP | lacA | HMPREF0758_3603 | HMPREF0758_1713 | Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362. | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | 0.763 |
zur | lacA | HMPREF0758_1712 | HMPREF0758_1713 | Transcriptional regulator, Fur family; COG: COG0735; Pfam: PF01475; InterPro: IPR002481; Belongs to the Fur family. | Bacterial transferase hexapeptide repeat protein; COG: COG0110; Pfam: PF00132. | 0.452 |