STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpP-2Endopeptidase Clp; COG: COG0740; Pfam: PF00574; InterPro: IPR001907; Belongs to the peptidase S14 family. (650 aa)    
Predicted Functional Partners:
EFE96599.1
Phage terminase large subunit (GpA); COG: COG5525; Pfam: PF05876; InterPro: IPR008866.
 
  
 0.945
vmtV
Phage portal protein, lambda family; COG: COG5511; Pfam: PF05136; InterPro: IPR006429.
    0.945
EFE96603.1
Hypothetical protein; COG: COG5471.
 
    0.915
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 
 0.884
vmtV2
Bacterial group 2 Ig-like protein; COG: COG5492; Pfam: PF02368; InterPro: IPR003343.
 
    0.829
clpA
ATP-dependent Clp protease ATP-binding subunit ClpA; COG: COG0542; Pfam: PF02861,PF00004,PF07724; InterPro: IPR013461; Belongs to the ClpA/ClpB family.
   
 
 0.792
EFE96598.1
Hypothetical protein; Pfam: PF07278; InterPro: IPR009901.
  
    0.762
EFE96600.1
Hypothetical protein.
       0.754
EFE96610.1
Phage tail tape measure protein, lambda family; COG: COG5281; Pfam: PF06791; InterPro: IPR006431.
 
    0.681
EFE93633.1
Hypothetical protein.
  
     0.660
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.