STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96604.1Hypothetical protein. (91 aa)    
Predicted Functional Partners:
EFE96603.1
Hypothetical protein; COG: COG5471.
  
    0.982
vmtZ
Prophage minor tail protein Z (GPZ); Pfam: PF06763; InterPro: IPR010633.
  
    0.827
vmtU
Phage minor tail protein U; Pfam: PF06141; InterPro: IPR009312.
  
    0.827
vmtV2
Bacterial group 2 Ig-like protein; COG: COG5492; Pfam: PF02368; InterPro: IPR003343.
  
    0.821
EFE96608.1
Phage minor tail protein G; Pfam: PF06894; InterPro: IPR010027.
  
    0.720
EFE96610.1
Phage tail tape measure protein, lambda family; COG: COG5281; Pfam: PF06791; InterPro: IPR006431.
  
    0.699
EFE96599.1
Phage terminase large subunit (GpA); COG: COG5525; Pfam: PF05876; InterPro: IPR008866.
  
    0.649
vmtV
Phage portal protein, lambda family; COG: COG5511; Pfam: PF05136; InterPro: IPR006429.
  
    0.649
clpP-2
Endopeptidase Clp; COG: COG0740; Pfam: PF00574; InterPro: IPR001907; Belongs to the peptidase S14 family.
  
    0.631
vmtT
Phage tail assembly protein T; Pfam: PF06223; InterPro: IPR009350.
  
    0.608
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.