STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96337.1Hypothetical protein; Pfam: PF02413; InterPro: IPR003458. (55 aa)    
Predicted Functional Partners:
EFE97104.1
Phage tail protein I; COG: COG4385; InterPro: IPR006521.
  
  
 0.612
EFE93493.1
Hypothetical protein.
  
  
 0.607
fii
Phage major tail tube protein; COG: COG3498; Pfam: PF04985; InterPro: IPR006498.
  
  
 0.593
gpj
Baseplate J-like protein; COG: COG3948; Pfam: PF04865; InterPro: IPR006949.
  
  
 0.563
EFE97114.1
Phage Tail Protein X; Pfam: PF05489; InterPro: IPR008861.
  
    0.542
gpw
Putative lysozyme; COG: COG3628; Pfam: PF04965; InterPro: IPR007048.
  
    0.522
EFE93360.1
Putative lysozyme; Pfam: PF04965; InterPro: IPR007048.
  
    0.510
EFE97107.1
Phage-related baseplate assembly protein; COG: COG4540; Pfam: PF04717; InterPro: IPR013046.
  
  
 0.452
EFE97097.1
Phage tail sheath protein; COG: COG3497; Pfam: PF04984; InterPro: IPR007067.
  
  
 0.443
EFE97101.1
Phage P2 GpU; COG: COG3499; Pfam: PF06995; InterPro: IPR009734.
  
    0.414
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.