STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96378.1Hypothetical protein; COG: COG3924; Pfam: PF06196; InterPro: IPR010398. (80 aa)    
Predicted Functional Partners:
panF
Sodium/pantothenate symporter; COG: COG4145; Pfam: PF00474; InterPro: IPR011849; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.953
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.786
YiiS
Hypothetical protein; COG: COG3691; Pfam: PF04175; InterPro: IPR005272.
  
     0.765
EFE93700.1
Hypothetical protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
  
     0.752
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.705
oapA
Opacity-associated protein A; COG: COG3061; Pfam: PF08525,PF04225; InterPro: IPR007340.
  
     0.703
ArfA_2
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
  
     0.644
YciN
Hypothetical protein.
  
     0.623
MlaB
STAS domain protein; COG: COG3113; Pfam: PF01740.
  
     0.622
zapC
Hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.620
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.