STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96391.1TIGR02099 family protein; COG: COG3164; InterPro: IPR011836. (1069 aa)    
Predicted Functional Partners:
tldD
TldD/PmbA family protein; COG: COG0312; Pfam: PF01523; InterPro: IPR002510.
     
 0.809
ypo
Hydrolase, carbon-nitrogen family; COG: COG0388; Pfam: PF00795; InterPro: IPR003010.
       0.787
igaA
Intracellular growth attenuator protein IgaA; Pfam: PF07095; InterPro: IPR010771.
  
     0.770
hnr
Protein hnr; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
  
     0.716
EFE96215.1
Hypothetical protein.
  
     0.713
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
     0.686
rseC
Positive regulator of sigma(E), RseC/MucC; COG: COG3086; Pfam: PF04246; InterPro: IPR007359.
  
     0.624
baeS2
Putative signal transduction histidine-protein kinase BaeS; COG: COG0642.
  
     0.623
pagP
Antimicrobial peptide resistance and lipid A acylation protein PagP; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
  
     0.597
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.597
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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