STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiA-2Ribosomal subunit interface protein; COG: COG1544; Pfam: PF02482; InterPro: IPR003489. (104 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
 
 0.876
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.851
rpmI
Ribosomal protein L35; COG: COG0291; Pfam: PF01632; InterPro: IPR001706; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.844
rpmC
Ribosomal protein L29; COG: COG0255; Pfam: PF00831; InterPro: IPR001854; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.841
ptsN
PTS IIA-like nitrogen-regulatory protein PtsN; COG: COG1762; Pfam: PF00359; InterPro: IPR002178.
  
  
 0.833
rpsU
Ribosomal protein S21; COG: COG0828; Pfam: PF01165; InterPro: IPR001911; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.825
rpsI
Ribosomal protein S9; COG: COG0103; Pfam: PF00380; InterPro: IPR000754; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.822
rpmA
Ribosomal protein L27; COG: COG0211; Pfam: PF01016; InterPro: IPR001684; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.821
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.818
rpmH
Ribosomal protein L34; Pfam: PF00468; InterPro: IPR000271.
   
 
 0.817
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.