STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YrbGK+-dependent Na+/Ca+ exchanger family protein; COG: COG0530; Pfam: PF01699; InterPro: IPR004481. (328 aa)    
Predicted Functional Partners:
kdsD2
Sugar isomerase, KpsF/GutQ family; COG: COG0794; Pfam: PF01380,PF00571; InterPro: IPR004800.
     
 0.722
ttg2A
ABC transporter, ATP-binding protein; COG: COG1127; Pfam: PF00005; InterPro: IPR003593.
       0.565
MlaE_1
Hypothetical protein; COG: COG0767; Pfam: PF02405; InterPro: IPR003453.
       0.540
MlaD
Hypothetical protein; COG: COG1463; Pfam: PF02470; InterPro: IPR003399.
       0.540
kdsC
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family.
     
 0.532
EFE96429.1
Hypothetical protein.
       0.532
lptB
ABC transporter, ATP-binding protein; COG: COG1137; Pfam: PF00005; InterPro: IPR003593.
     
 0.531
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
     
 0.530
ttg2D
Toluene tolerance protein Ttg2D; COG: COG2854; Pfam: PF05494; InterPro: IPR008869.
       0.521
MlaB
STAS domain protein; COG: COG3113; Pfam: PF01740.
       0.521
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.